Easy Protein Tree Annotating

Easy Protein Tree Annotating (EPTA) will solve your problem of how to build an informative protein phylogenetic tree easil to help you to build a protein tree from FASTA files.

Introduction

• Introduction
  • Features
  • Github
  • Support

Download

• Download
  • Before Installation
  • Install EPTA
  • Standalone Version For Windows 10 or Higher:

Quick Start

Play with EPTA:

• Quick Start
  • Simple Tree
  • Annotate Domain
  • Annotate Domain and Taxonomy
  • Annotate Domain, Taxonomy and Branch Information

Manual

Learn how to use EPTA:

• Manual
  • Before you start
    • Configuration file
    • Log file
  • Make a tree from FASTA file
    • Example command-line
    • Input file
    • Output path
    • Check point
    • Parse FASTA
  • Multiple sequence alignment
    • MAFFT
    • MUSCLE
    • trimAl
  • Make a tree from alignment file
  • Annotate a tree file

Commandline Reference

• Commandline Reference