.. Protein Tree Annotating documentation master file, created by
   sphinx-quickstart on Tue Jun 22 15:52:10 2021.
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Easy Protein Tree Annotating
============================

Easy Protein Tree Annotating (EPTA) will solve your problem of how to build an informative protein phylogenetic tree easil
to help you to build a protein tree from FASTA files.

Introduction
------------

.. toctree::
   :maxdepth: 2

   intro/intro

Download
------------

.. toctree::
   :maxdepth: 2

   download/download

Quick Start
------------
Play with EPTA:

.. toctree::
   :maxdepth: 2

   manual/quickstart

Manual
------------
Learn how to use EPTA:

.. toctree::
   :maxdepth: 3

   manual/manual

Commandline Reference
------------

.. toctree::
  :maxdepth: 1

  manual/commandline